copa

Functions to perform cancer outlier profile analysis.

Bioconductor version: Release (2.12)

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at med.umich.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("copa")

To cite this package in a publication, start R and enter:

    citation("copa")

Documentation

PDF R Script copa Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version 1.28.0
In Bioconductor since BioC 1.8 (R-1.13)
License Artistic-2.0
Depends Biobase, methods
Imports
Suggests colonCA
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source copa_1.28.0.tar.gz
Windows Binary copa_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) copa_1.28.0.tgz
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