chopsticks

The snp.matrix and X.snp.matrix classes

Bioconductor version: Release (2.12)

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chopsticks")

To cite this package in a publication, start R and enter:

    citation("chopsticks")

Documentation

PDF R Script snpMatrix
PDF snpMatrix-4d.pdf
PDF snpMatrix-paper-HumanHeridity2007.pdf
PDF snpStatsBug-vignette.pdf
PDF snpStatsBug_1.3.6_-vignette.pdf
PDF snpStatsBug_1.5.4_-vignette.pdf
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, SNPsAndGeneticVariability, Software
Version 1.24.2
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R(>= 2.10.0), survival, methods
Imports
Suggests hexbin
System Requirements
URL http://outmodedbonsai.sourceforge.net/
Depends On Me ind1KG
Imports Me
Suggests Me

Package Downloads

Package Source chopsticks_1.24.2.tar.gz
Windows Binary chopsticks_1.24.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chopsticks_1.24.2.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center