An R package for nucleosome positioning prediction

Bioconductor version: Release (2.12)

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at

Author: Ji-Ping Wang <jzwang at>; Liqun Xi <lxi700 at>

Maintainer: Ji-Ping Wang<jzwang at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An R package for Nucleosome positioning prediction
PDF NuPoP-manual.pdf
PDF   Reference Manual


biocViews Classification, Genetics, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL-2
Depends R (>= 2.10)
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source NuPoP_1.10.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) NuPoP_1.10.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center