Filter replicated high-throughput transcriptome sequencing data

Bioconductor version: Release (2.12)

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic

Maintainer: Andrea Rau <andrea.rau at>

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PDF R Script HTSFilter Vignette
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, HighThroughputSequencing, Preprocessing, RNAseq, Software
Version 1.0.1
In Bioconductor since BioC 2.13 (R-2.18)
License Artistic-2.0
Depends methods, Biobase(>= 2.16.0), R (>= 2.10.0)
Imports DESeq(>= 1.8.3), edgeR(>= 2.6.12), DESeq2, GenomicRanges, IRanges
Suggests EDASeq(>= 1.2.0)
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source HTSFilter_1.0.1.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) HTSFilter_1.0.1.tgz
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