DNAcopy

DNA copy number data analysis

Bioconductor version: Release (2.12)

Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DNAcopy")

To cite this package in a publication, start R and enter:

    citation("DNAcopy")

PDF	R Script	DNAcopy
PDF		Reference Manual

biocViews	CopyNumberVariants, Microarray, Software
Version	1.34.0
In Bioconductor since	BioC 1.6 (R-1.11) or earlier
License	GPL (>= 2)
Depends
Imports
Suggests
System Requirements
URL
Depends On Me	CGHcall, cghMCR, Clonality, CNAnorm, CRImage, MEDIPS, snapCGH, SomatiCA
Imports Me	Clonality, cn.farms, GWASTools, MEDIPS, MinimumDistance, Repitools, snapCGH, SomatiCA
Suggests Me	ADaCGH2, beadarraySNP, Clonality, cn.mops, fastseg, genoset, Repitools

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