Simulation of ChIP-seq experiments

Bioconductor version: Release (2.12)

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at>

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PDF R Script Simulating ChIP-seq experiments
PDF   Reference Manual


biocViews Bioinformatics, ChIPseq, Infrastructure, Software
Version 1.14.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends Biostrings
Imports IRanges, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests actuar, zoo
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ChIPsim_1.14.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChIPsim_1.14.0.tgz
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