CGHnormaliter

Normalization of array CGH data with imbalanced aberrations.

Bioconductor version: Release (2.12)

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHnormaliter")

To cite this package in a publication, start R and enter:

    citation("CGHnormaliter")

Documentation

PDF R Script CGHnormaliter
PDF CGHnormaliter-method.pdf
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software
Version 1.14.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 3)
Depends CGHcall(>= 2.17.0), CGHbase(>= 1.15.0)
Imports Biobase, CGHbase, CGHcall, methods, stats, utils
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CGHnormaliter_1.14.0.tar.gz
Windows Binary CGHnormaliter_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CGHnormaliter_1.14.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center