Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: Release (2.11)

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony HÃ¥ndstad Developer [aut, cre]

Maintainer: Tony HÃ¥ndstad Developer <tony.handstad at>

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PDF R Script Triform users guide
PDF   Reference Manual


biocViews ChIPseq, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-2
Depends R (>= 2.11.0), IRanges, yaml
Imports IRanges, yaml, BiocGenerics
Suggests RUnit
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source triform_1.0.0.tar.gz
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MacOS 10.5 (Leopard) triform_1.0.0.tgz
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