Interactive visualization and manipulation of nested networks.

Bioconductor version: Release (2.11)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF fig1.pdf
PDF fig2.pdf
PDF fig3.pdf
PDF fig4.pdf
PDF fig5a.pdf
PDF fig5b.pdf
PDF fig5c.pdf
PDF fig6.pdf
PDF R Script Main vignette: RedeR Overview
PDF   Reference Manual
Text   NEWS


biocViews GraphsAndNetworks, NetworkVisualization, Networks, Software, Visualization
Version 1.6.1
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.15), methods, igraph, RCurl, XML
Imports rJava, XMLRPC
Suggests PANR, pvclust
System Requirements
Depends On Me
Imports Me Mulder2012
Suggests Me PANR

Package Downloads

Package Source RedeR_1.6.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) RedeR_1.6.1.tgz
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