Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Bioconductor version: Release (2.11)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xuezhang at>, Raphael Gottardo <raph at>, Sangsoon Woo, <swoo at>

Maintainer: Renan Sauteraud <rsautera at>

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PDF R Script The PING users guide
PDF R Script Using PING with paired-end sequencing data
PDF   Reference Manual
Text   NEWS


biocViews Clustering, Sequencing, Software, Statistics, Visualization
Version 2.2.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R(>= 2.15.0), chipseq, IRanges, GenomicRanges
Imports methods, PICS, graphics, grDevices, stats, Gviz, fda, BSgenome, stats4, BiocGenerics, Rsamtools
Suggests parallel, ShortRead, rtracklayer
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source PING_2.2.0.tar.gz
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MacOS 10.5 (Leopard) PING_2.2.0.tgz
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