HiTC

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: Release (2.11)

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("HiTC")

To cite this package in a publication, start R and enter:

    citation("HiTC")

Documentation

PDF R Script Hight-Throughput Chromosome Conformation Capture analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.10.0), methods, girafe(>= 1.3.1), genomeIntervals(>= 1.7.1), RColorBrewer
Imports methods, Biobase, Biostrings, graphics, grDevices, ShortRead
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System Requirements
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Package Downloads

Package Source HiTC_1.2.0.tar.gz
Windows Binary HiTC_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) HiTC_1.2.0.tgz
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