CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (2.11)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CNTools")

To cite this package in a publication, start R and enter:

    citation("CNTools")

Documentation

PDF R Script NCTools HowTo
PDF   Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Software
Version 1.14.0
In Bioconductor since BioC 2.5 (R-2.10)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
Imports
Suggests
System Requirements
URL
Depends On Me cghMCR
Imports Me
Suggests Me

Package Downloads

Package Source CNTools_1.14.0.tar.gz
Windows Binary CNTools_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) CNTools_1.14.0.tgz
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