affystart |
Pre-processing for Affymetrix Data |
annBM |
Select Available Annotation from a Biomart |
foldFilt |
Output Fold Change Data |
foldFiltBM |
Output Fold Change Data using biomaRt |
getUniqueLL |
Subset a Vector of Probesets |
hyperG2annaffy |
HTML tables from GOIDs |
hyperGoutput |
Output Tables Based on Hypergeometric Test |
limma2annaffy |
Function to Create HTML Tables from limma Objects |
limma2annaffy.na |
Function to Create HTML Tables from limma Objects |
limma2biomaRt |
Function to Create HTML Tables from limma Objects using biomaRt for Annotation |
limma2biomaRt.na |
Function to Create HTML Tables from limma Objects using biomaRt for Annotation |
linksBM |
Select Available Annotation from a Biomart |
makeHmap |
A function to create a heatmap-like object or matrix of correlations between miRNA and mRNA data. |
maplot |
A Function to make MA plots from all arrays. |
mirna2mrna |
A function to map miRNA to mRNA. |
plotDeg |
Functions to Plot Density and RNA Degradation Plots |
plotHist |
Functions to Plot Density and RNA Degradation Plots |
plotPCA |
A Function to Make a PCA Plot from an ExpressionSet |
probes2table |
Convert Affy Probe ids to Annotated HTML Table |
probes2tableBM |
Convert Affy Probe ids to Annotated HTML Table using biomaRt |
vennCounts2 |
Compute Counts for Venn Diagram |
vennSelect |
Select and Output Genelists Based on Venn Diagrams |
vennSelectBM |
Select and Output Genelists Based on Venn Diagrams using biomaRt |
vennSelectFC |
Select and Output Gene Lists Based on Venn Diagrams |
writeFit |
Function to output annotated fit data from limma |