condplot |
Draw the plot of the condition numbers vs. the number of genes in the signature matrix |
datasets |
data objects for liver and kidney mixing samples |
DeconRNASeq |
Function for Deconvolution of Complex Samples from RNA-Seq. |
DeconRNASeq.package |
package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements |
DeconRNASeq_package |
package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements |
fraction |
mixing fractions for multi-tissues mixing samples |
liver_kidney |
data objects for liver and kidney mixing samples |
multiplot |
Draw the plots of proportions of cells determined from deconvolution vs. proportions of the cells actually mixed (when available) with RMSE. |
multi_tissue |
data objects for multi-tissues mixing samples |
proportions |
proportions for liver and kidney mixing samples |
rmse |
Calculate the differences between proportions predicted by deconvolution and the values actually measured |
signatures |
data objects for liver and kidney pure samples |
x.data |
data objects for multi-tissues mixing samples |
x.signature |
data objects for multi-tissues pure samples |
x.signature.filtered |
filtered signatures for multi-tissues pure samples |
x.signature.filtered.optimal |
selected signatures from multi-tissues pure samples |