DSS-package |
Dispersion shrinkage for sequencing data |
dispersion |
Acessor functions for the 'dispersion' slot in a SeqCountData object. |
dispersion-method |
Acessor functions for the 'dispersion' slot in a SeqCountData object. |
dispersion<- |
Acessor functions for the 'dispersion' slot in a SeqCountData object. |
dispersion<--method |
Acessor functions for the 'dispersion' slot in a SeqCountData object. |
DSS |
Dispersion shrinkage for sequencing data |
estDispersion |
Estimate and shrink tag-specific dipsersions |
estDispersion-method |
Estimate and shrink tag-specific dipsersions |
estNormFactors |
Estimate normalization factors |
estNormFactors-method |
Estimate normalization factors |
newSeqCountSet |
Class '"SeqCountSet"' - container for count data from sequencing experiment |
normalizationFactor |
Accessor functions for the 'normalizationFactor' slot in a SeqCountData object. |
normalizationFactor-method |
Accessor functions for the 'normalizationFactor' slot in a SeqCountData object. |
normalizationFactor<- |
Accessor functions for the 'normalizationFactor' slot in a SeqCountData object. |
normalizationFactor<--method |
Accessor functions for the 'normalizationFactor' slot in a SeqCountData object. |
SeqCountSet |
Class '"SeqCountSet"' - container for count data from sequencing experiment |
SeqCountSet-class |
Class '"SeqCountSet"' - container for count data from sequencing experiment |
seqData |
A simulated 'SeqCountData' object. |
waldTest |
Perform gene-wise Wald test for two group comparisons for sequencing count data. |
waldTest-method |
Perform gene-wise Wald test for two group comparisons for sequencing count data. |