Dispersion shrinakge for sequencing data.


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Documentation for package ‘DSS’ version 1.0.0

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DSS-package Dispersion shrinkage for sequencing data
dispersion Acessor functions for the 'dispersion' slot in a SeqCountData object.
dispersion-method Acessor functions for the 'dispersion' slot in a SeqCountData object.
dispersion<- Acessor functions for the 'dispersion' slot in a SeqCountData object.
dispersion<--method Acessor functions for the 'dispersion' slot in a SeqCountData object.
DSS Dispersion shrinkage for sequencing data
estDispersion Estimate and shrink tag-specific dipsersions
estDispersion-method Estimate and shrink tag-specific dipsersions
estNormFactors Estimate normalization factors
estNormFactors-method Estimate normalization factors
newSeqCountSet Class '"SeqCountSet"' - container for count data from sequencing experiment
normalizationFactor Accessor functions for the 'normalizationFactor' slot in a SeqCountData object.
normalizationFactor-method Accessor functions for the 'normalizationFactor' slot in a SeqCountData object.
normalizationFactor<- Accessor functions for the 'normalizationFactor' slot in a SeqCountData object.
normalizationFactor<--method Accessor functions for the 'normalizationFactor' slot in a SeqCountData object.
SeqCountSet Class '"SeqCountSet"' - container for count data from sequencing experiment
SeqCountSet-class Class '"SeqCountSet"' - container for count data from sequencing experiment
seqData A simulated 'SeqCountData' object.
waldTest Perform gene-wise Wald test for two group comparisons for sequencing count data.
waldTest-method Perform gene-wise Wald test for two group comparisons for sequencing count data.