Data and code package to reproduce Figure panels 4B and 4D from the ENCODE (2012) paper

Bioconductor version: 2.10

The package provides the data and the code needed to reproduce Figure panels 4B and 4D from the ENCODE (2012) paper. The data are provided as R data objects and are documented by manual pages. The code to reproduce the figure panels is presented in the package vignette.

Author: Chao Cheng and Wolfgang Huber

Maintainer: Wolfgang Huber <whuber at embl.de>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Figure panels 4b and 4d from the ENCODE (2012) paper
PDF   Reference Manual


biocViews ExperimentData
Imports Biobase, earth, randomForest
System Requirements
License Artistic-2.0 # modify as desired
Depends On Me
Imports Me
Suggests Me
Version 1.0.2

Package Downloads

Package Source ENCODEFig4Band4D_1.0.2.tar.gz
Windows Binary ENCODEFig4Band4D_1.0.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ENCODEFig4Band4D_1.0.2.tgz
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Fred Hutchinson Cancer Research Center