targetscan.Mm.eg.db

TargetScan miRNA target predictions for mouse

Bioconductor version: 2.10

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("targetscan.Mm.eg.db")

To cite this package in a publication, start R and enter:

    citation("targetscan.Mm.eg.db")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, FunctionalAnnotation
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.17.27)
Imports methods, AnnotationDbi
Suggests
System Requirements
License file LICENSE
URL
Depends On Me
Imports Me
Suggests Me MmPalateMiRNA
Version 0.5.0

Package Downloads

Package Source targetscan.Mm.eg.db_0.5.0.tar.gz
Windows Binary targetscan.Mm.eg.db_0.5.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary targetscan.Mm.eg.db_0.5.0.tgz
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Fred Hutchinson Cancer Research Center