/****************************************************************************** * * * cosmo - Constrained search for motifs in DNA sequences * * Authors: Oliver Bembom, Fabian Gallusser, and Sandrine Dudoit * * * * Conditions of use: * * * * 1. cosmo is under the exclusive copyright of Oliver Bembom, * * (bembom@berkeley.edu), the Regents of the University of California, * * and Peter Spellucci (spellucci@mathematik.tu-darmstadt.de). * * * * 2. Permission to use, copy, modify, and distribute any part of this * * software for research purposes, without fee and without a written * * agreement, is hereby granted, provided that this license appears in * * all copies. Commercial uses require permission and licensing from * * Oliver Bembom, the Regents of the University of California, and * * Peter Spellucci. * * * * 3. If you use this software in your research, please cite * * * * O. Bembom, S. Keles, M.J. van der Laan (2007). Supervised Detection * * of Conserved Motifs in DNA Sequences with cosmo. Statistical * * Applications in Genetics and Molecular Biology: Vol. 6 : Iss. 1, * * Article 8. http://www.bepress.com/sagmb/vol6/iss1/art8. * * * * cosmo makes use of the donlp2() function by Peter Spellucci. * * The use of donlp2() must be acknowledged in any publication which * * contains results obtained with cosmo or parts of it. Citation of the * * author's name and netlib-source is suitable. * * * * 4. In no event shall the authors be liable to any party for direct, in- * * direct, special, incidental, or consequential damages, including lost * * profits, arising out of the use of this software, even if the authors * * have been advised of the possibility of such damage. * * * * 5. cosmo is provided on an 'as is' basis, and the authors have no obli- * * gations to provide maintenance, support, updates, enhancements, or * * modifications. The authors make no representations and extends no * * warranties of any kind, either expressed or implied, including, but * * not limited to, the implied warranties of merchantability or fitness * * for a particular purpose, or that the use of the material will not * * infringe any patent, trademark or other rights. * * * * * ******************************************************************************/