sigaR

statistics for integrative genomics analyses in R

Bioconductor version: 2.10

Facilites the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.

Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("sigaR")

To cite this package in a publication, start R and enter:

    citation("sigaR")

Documentation

PDF R Script sigaR
PDF   Reference Manual

Details

biocViews Bioinformatics, DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH
Depends Biobase, CGHbase, corpcor (>= 1.6.2), methods
Imports graphics, marray, MASS, mvtnorm, quadprog, snowfall, stats
Suggests
System Requirements
License GPL (>= 2)
URL http://www.few.vu.nl/~wvanwie
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source sigaR_1.0.0.tar.gz
Windows Binary sigaR_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary sigaR_1.0.0.tgz
Package Downloads Report Download Stats

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