manta

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: 2.10

Tools for robust comparative metatranscriptomics.

Author: David M. Schruth <dschruth at uw.edu> and Adrian Marchetti <amarchetti at unc.edu>

Maintainer: David M. Schruth <dschruth at uw.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("manta")

To cite this package in a publication, start R and enter:

    citation("manta")

Documentation

PDF R Script manta
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Bioinformatics, DataImport, DifferentialExpression, GeneExpression, Genetics, HighThroughputSequencing, QualityControl, RNAseq, Software, Visualization
Depends R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports Hmisc, caroline(>= 0.6.6)
Suggests RSQLite, plotrix
System Requirements
License Artistic-2.0
URL http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source manta_1.2.0.tar.gz
Windows Binary manta_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary manta_1.2.0.tgz
Package Downloads Report Download Stats

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