genefu

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 2.10

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefu")

To cite this package in a publication, start R and enter:

    citation("genefu")

Documentation

PDF R Script genefu An Introduction (HowTo)
PDF   Reference Manual
Text   README

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Depends R (>= 2.10), survcomp, mclust
Imports amap
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable
System Requirements
License Artistic-2.0
URL http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Version 1.6.1
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source genefu_1.6.1.tar.gz
Windows Binary genefu_1.6.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary genefu_1.6.1.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center