ffpe

Quality assessment and control for FFPE microarray expression data

Bioconductor version: 2.10

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <lwaldron at hsph.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ffpe")

To cite this package in a publication, start R and enter:

    citation("ffpe")

Documentation

PDF R Script ffpe package user guide
PDF   Reference Manual

Details

biocViews Bioinformatics, GeneExpression, Microarray, QualityControl, Software
Depends R (>= 2.10.0), TTR, methods
Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests genefilter, affy, ffpeExampleData
System Requirements
License GPL (>2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source ffpe_1.0.0.tar.gz
Windows Binary ffpe_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ffpe_1.0.0.tgz
Package Downloads Report Download Stats

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