domainsignatures

Geneset enrichment based on InterPro domain signatures

Bioconductor version: 2.10

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("domainsignatures")

To cite this package in a publication, start R and enter:

    citation("domainsignatures")

Documentation

PDF R Script Gene set enrichment using InterPro domain signatures
PDF   Reference Manual

Details

biocViews Annotation, Bioinformatics, Pathways, Software
Depends R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports AnnotationDbi
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.16.0
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source domainsignatures_1.16.0.tar.gz
Windows Binary domainsignatures_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary domainsignatures_1.16.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center