Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Bioconductor version: 2.10

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

Author: L. Goff, C. Trapnell

Maintainer: Loyal A. Goff <lgoff at>

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PDF R Script An R package for visualization and analysis of Cufflinks high-throughput sequencing data
PDF R Script cuffData_schema.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Clustering, DataImport, DataRepresentation, DifferentialExpression, GeneExpression, HighThroughputSequencing, HighThroughputSequencingData, Infrastructure, MultipleComparisons, QualityControl, RNAseq, RNAseqData, Software, Visualization
Depends R (>= 2.7.0), RSQLite, ggplot2, reshape2
Imports methods
Suggests cluster
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Version 1.2.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source cummeRbund_1.2.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary cummeRbund_1.2.0.tgz
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