Tools for performing taxonomic assignment.

Bioconductor version: 2.10

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script clst
PDF R Script clstutils
PDF   Reference Manual


biocViews Classification, HighThroughputSequencing, QualityControl, Software, Visualization
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
Suggests RUnit, RSVGTipsDevice
System Requirements
License GPL-3
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source clstutils_1.4.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary clstutils_1.4.0.tgz
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