chipseq: A package for analyzing chipseq data

Bioconductor version: 2.10

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at>

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To cite this package in a publication, start R and enter:



PDF R Script A Sample ChIP-Seq analysis workflow
PDF   Reference Manual


biocViews ChIPseq, Software
Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Version 1.6.1
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source chipseq_1.6.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary chipseq_1.6.1.tgz
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