Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: 2.10

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

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PDF R Script aCGH Overview
PDF   Reference Manual


biocViews CopyNumberVariants, DataImport, Genetics, Software
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
System Requirements
License GPL-2
Depends On Me ADaCGH2, CRImage
Imports Me snapCGH
Suggests Me beadarraySNP
Version 1.34.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source aCGH_1.34.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary aCGH_1.34.0.tgz
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