Rtreemix

Rtreemix: Mutagenetic trees mixture models.

Bioconductor version: 2.10

Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Author: Jasmina Bogojeska

Maintainer: Jasmina Bogojeska <jasmina at mpi-inf.mpg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rtreemix")

To cite this package in a publication, start R and enter:

    citation("Rtreemix")

Documentation

PDF R Script ClassDiagram.pdf
PDF R Script ExtendedVignette.pdf
PDF R Script Rtreemix
PDF R Script topologies.pdf
PDF   Reference Manual

Details

biocViews Bioinformatics, Software
Depends R (>= 2.5.0), methods, graph, Biobase
Imports methods, graph, Biobase, Hmisc
Suggests Rgraphviz
System Requirements
License LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version 1.18.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source Rtreemix_1.18.0.tar.gz
Windows Binary Rtreemix_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Rtreemix_1.18.0.tgz
Package Downloads Report Download Stats

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