ReQON

Recalibrating Quality Of Nucleotides

Bioconductor version: 2.10

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanski at dom.wustl.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ReQON")

To cite this package in a publication, start R and enter:

    citation("ReQON")

Documentation

PDF R Script ReQON Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Depends R (>= 2.15.0), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
Suggests
System Requirements Java version >= 1.6
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.3.9
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source ReQON_1.3.9.tar.gz
Windows Binary ReQON_1.3.9.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ReQON_1.3.9.tgz
Package Downloads Report Download Stats

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