PING
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data
Bioconductor version: 2.10
Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.
Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <raph at stat.ubc.ca>, Sangsoon Woo, <swoo at fhcrc.org>
Maintainer: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <raph at stat.ubc.ca>, Sangsoon Woo, <swoo at fhcrc.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PING")
To cite this package in a publication, start R and enter:
citation("PING")
Documentation
| R Script | The PING users guide | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Clustering, Sequencing, Software, Statistics, Visualization |
| Depends | R(>= 2.11.0),chipseq |
| Imports | methods, graphics, grDevices, stats, GenomeGraphs, fda, IRanges, GenomicRanges, BSgenome, stats4, BiocGenerics |
| Suggests | snowfall, ShortRead, rtracklayer |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.10 (R-2.15) |
Package Downloads
| Package Source | PING_1.0.0.tar.gz |
| Windows Binary | PING_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | PING_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: webmaster@bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2012
