PICS

Probabilistic inference of ChIP-seq

Bioconductor version: 2.10

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("PICS")

To cite this package in a publication, start R and enter:

    citation("PICS")

Documentation

PDF R Script The PICS users guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPseq, Clustering, Sequencing, Software, Visualization
Depends R (>= 2.11.0), BiocGenerics(>= 0.1.3), IRanges(>= 1.13.10), GenomicRanges, BSgenome
Imports methods, BiocGenerics, stats4, IRanges, GenomicRanges, BSgenome, graphics, grDevices, stats
Suggests snowfall, ShortRead, rtracklayer
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.10.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source PICS_1.10.0.tar.gz
Windows Binary PICS_1.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary PICS_1.10.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center