NuPoP
An R package for nucleosome positioning prediction
Bioconductor version: 2.10
NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.
Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>
Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("NuPoP")
To cite this package in a publication, start R and enter:
citation("NuPoP")
Documentation
| R Script | An R package for Nucleosome positioning prediction | |
| R Script | NuPoP-manual.pdf | |
| Reference Manual |
Details
| biocViews | Software, genetics,visualization,classification |
| Depends | R (>= 2.10) |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.6.0 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | NuPoP_1.6.0.tar.gz |
| Windows Binary | NuPoP_1.6.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | NuPoP_1.6.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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