A package for de novo CNV detection in case-parent trios

Bioconductor version: 2.10

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf

Maintainer: Moiz Bootwalla <mbootwa1 at>, Robert B Scharpf <rscharpf at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Detection of de novo copy number alterations in case-parent trios
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, CopyNumberVariants, Microarray, SNP, Software
Depends R (>= 2.14), IRanges(>= 1.13.30)
Imports methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.17.22), ff, SNPchip(>= 2.0.3), Biobase, foreach, oligoClasses(>= 1.17.38)
Suggests human610quadv1bCrlmm, RUnit
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source MinimumDistance_1.0.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary MinimumDistance_1.0.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:


Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center