MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: 2.10

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at> with contributions from Guangchuang Yu <guangchuangyu at>

Maintainer: Laurent Gatto <lg390 at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Base Functions and Classes for MS-based Proteomics
PDF R Script itraqchem.pdf
PDF R Script MSnbase development
PDF R Script MSnbase IO capabilities
PDF R Script plotMzDelta-pride12011.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, Software
Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.3), Biobase(>= 2.15.2), ggplot2, mzR
Imports graphics, plyr, IRanges, preprocessCore, vsn, grid, reshape
Suggests testthat, zoo, pgfSweave, Rdisop
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me isobar
Version 1.4.1
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source MSnbase_1.4.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary MSnbase_1.4.1.tgz
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