GraphAlignment

Bioconductor version: 2.10

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GraphAlignment")

To cite this package in a publication, start R and enter:

    citation("GraphAlignment")

Documentation

PDF	R Script	a.pdf
PDF	R Script	align_principle2b1.pdf
PDF	R Script	align_principle2c1.pdf
PDF	R Script	align_principle_short1.pdf
PDF	R Script	binning-01a.pdf
PDF	R Script	GraphAlignment
PDF		Reference Manual
Text		LICENSE

Details

biocViews	GraphsAndNetworks, Software
Depends
Imports
Suggests
System Requirements
License	file LICENSE
URL	http://www.thp.uni-koeln.de/~berg/GraphAlignment/
Depends On Me
Imports Me
Suggests Me
Version	1.18.0
Since	Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source	GraphAlignment_1.18.0.tar.gz
Windows Binary	GraphAlignment_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GraphAlignment_1.18.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center