GWASTools

Tools for Genome Wide Association Studies

Bioconductor version: 2.10

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

Author: Stephanie M. Gogarten, Cathy Laurie, Tushar Bhangale, Matthew P. Conomos, Cecilia Laurie, Caitlin McHugh, Ian Painter, Xiuwen Zheng, Jess Shen, Rohit Swarnkar

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GWASTools")

To cite this package in a publication, start R and enter:

    citation("GWASTools")

Documentation

PDF R Script GWAS Data Cleaning
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneticVariability, Microarray, QualityControl, SNP, Software
Depends Biobase, ncdf, GWASExactHW, sandwich
Imports methods, DBI, RSQLite, DNAcopy, survival, lmtest
Suggests GWASdata, RUnit, gdsfmt, SNPRelate
System Requirements
License Artistic-2.0
URL
Depends On Me GWASdata
Imports Me
Suggests Me
Version 1.2.1
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source GWASTools_1.2.1.tar.gz
Windows Binary GWASTools_1.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GWASTools_1.2.1.tgz
Package Downloads Report Download Stats

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