GSEABase

Gene set enrichment data structures and methods

Bioconductor version: 2.10

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSEABase")

To cite this package in a publication, start R and enter:

    citation("GSEABase")

Documentation

PDF R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, Infrastructure, Software
Depends R (>= 2.6.0), BiocGenerics, Biobase, annotate, methods, graph
Imports BiocGenerics, annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz
System Requirements
License Artistic-2.0
URL
Depends On Me AGDEX, BicARE, GSVA, GSVAdata, HTSanalyzeR, PROMISE
Imports Me Category, categoryCompare, cellHTS2, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE
Suggests Me BiocCaseStudies, categoryCompare, gage, GlobalAncova, globaltest, PGSEA, phenoTest
Version 1.18.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source GSEABase_1.18.0.tar.gz
Windows Binary GSEABase_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GSEABase_1.18.0.tgz
Package Downloads Report Download Stats

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