R version of CellNOpt, boolean features only

Bioconductor version: 2.10

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: C.Terfve, T.Cokelaer

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script CellNOptR0_1flowchart.pdf
PDF R Script Fig2.pdf
PDF R Script Fig3.pdf
PDF R Script Fig4.pdf
PDF R Script Fig6.pdf
PDF R Script Main vignette:Playing with networks using CellNOptR
PDF   Reference Manual


biocViews Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Depends RBGL, graph
Suggests Rgraphviz
System Requirements Graphviz version >= 2.2
License GPL-2
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source CellNOptR_1.2.0.tar.gz
Windows Binary CellNOptR_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary CellNOptR_1.2.0.tgz
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Fred Hutchinson Cancer Research Center