NetResponse: functional network analysis


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Documentation for package ‘netresponse’ version 1.8.0

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netresponse-package NetResponse: Global modeling of transcriptional responses in interaction networks
add.ellipse Add ellipse to an existing plot.
detect.responses detect.responses
dna Dna damage data set (PPI and expression)
find.similar.features Find similar features with a given subnetwork.
get.dat get.dat
get.dat-method Class "NetResponseModel"
get.model.parameters get.model.parameters
get.subnets get.subnets
get.subnets-method get.subnets
ICMg.combined.sampler ICMg.combined.sampler
ICMg.get.comp.memberships ICMg.get.comp.memberships
ICMg.links.sampler ICMg.links.sampler
list.significant.responses List responses with significant associations to a given sample group.
model.stats model.stats
netresponse NetResponse: Global modeling of transcriptional responses in interaction networks
NetResponseModel-class Class "NetResponseModel"
order.responses order.responses
osmo Osmoshock data set (PPI and expression)
plot.data Plot observed data.
plot.expression plot.expression
plot.response plot.response
plot.responses plot.responses
plot.scale plot.scale
plot.subnet plot.subnet
plotAssociations Association strength between category labels and responses.
plotPCA plotPCA
read.sif Reading network files
response.enrichment Enrichment for a specified sample group in the given response.
response2sample response2sample
sample2response sample2response
set.breaks set.breaks
show-method Class "NetResponseModel"
toydata toydata
vdp.mixt vdp.mixt
write.netresponse.results Write NetResponse results summary into a file.
[[-method Class "NetResponseModel"