netresponse-package | NetResponse: Global modeling of transcriptional responses in interaction networks |
add.ellipse | Add ellipse to an existing plot. |
detect.responses | detect.responses |
dna | Dna damage data set (PPI and expression) |
find.similar.features | Find similar features with a given subnetwork. |
get.dat | get.dat |
get.dat-method | Class "NetResponseModel" |
get.model.parameters | get.model.parameters |
get.subnets | get.subnets |
get.subnets-method | get.subnets |
ICMg.combined.sampler | ICMg.combined.sampler |
ICMg.get.comp.memberships | ICMg.get.comp.memberships |
ICMg.links.sampler | ICMg.links.sampler |
list.significant.responses | List responses with significant associations to a given sample group. |
model.stats | model.stats |
netresponse | NetResponse: Global modeling of transcriptional responses in interaction networks |
NetResponseModel-class | Class "NetResponseModel" |
order.responses | order.responses |
osmo | Osmoshock data set (PPI and expression) |
plot.data | Plot observed data. |
plot.expression | plot.expression |
plot.response | plot.response |
plot.responses | plot.responses |
plot.scale | plot.scale |
plot.subnet | plot.subnet |
plotAssociations | Association strength between category labels and responses. |
plotPCA | plotPCA |
read.sif | Reading network files |
response.enrichment | Enrichment for a specified sample group in the given response. |
response2sample | response2sample |
sample2response | sample2response |
set.breaks | set.breaks |
show-method | Class "NetResponseModel" |
toydata | toydata |
vdp.mixt | vdp.mixt |
write.netresponse.results | Write NetResponse results summary into a file. |
[[-method | Class "NetResponseModel" |