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Package Maintainer Title
AffyExpress Xuejun Arthur Li Affymetrix Quality Assessment and Analysis Tool
apComplex Denise Scholtens Estimate protein complex membership using AP-MS protein data
arrayQuality Agnes Paquet Assessing array quality on spotted arrays
BioMVCClass Elizabeth Whalen Model-View-Controller (MVC) Classes That Use Biobase
cellHTS Ligia Bras Analysis of cell-based screens
cellHTS2 Ligia Bras Analysis of cell-based screens - revised version of cellHTS
CGHcall Sjoerd Vosse Calling aberrations for array CGH tumor profiles.
ChromoViz Jihoon Kim Multimodal visualization of gene expression data
copa James W. MacDonald Functions to perform cancer outlier profile analysis.
ctc Antoine Lucas Cluster and Tree Conversion.
EBImage Oleg Sklyar Image processing and image analysis toolkit for R
ecolitk Laurent Meta-data and tools for E. coli
exonmap Crispin Miller High level analysis of Affymetrix exon array data
explorase Michael Lawrence GUI for exploratory data analysis of systems biology data
flowViz Florian Hahne Visualization for flow cytometry
gaggle Paul Shannon Broadcast data between R and Java bioinformatics programs
geneplotter Biocore Team c/o BioC user list Grapics related functions for Bioconductor
GeneTS Korbinian Strimmer Microarray Time Series and Network Analysis
goTools Agnes Paquet Functions for Gene Ontology database
Heatplus Alexander Ploner A heat map displaying covariates and coloring clusters
hexbin Nicholas Lewin-Koh Hexagonal Binning Routines
idiogram Karl J. Dykema idiogram
iSNetwork Elizabeth Whalen Interactive Network Plots
iSPlot Elizabeth Whalen Linking Plots
macat Joern Toedling MicroArray Chromosome Analysis Tool
maCorrPlot Alexander Ploner Visualize artificial correlation in microarray data
maDB Johannes Rainer Microarray database and utility functions for microarray data analysis.
MergeMaid Xiaogang Zhong Merge Maid
MVCClass Elizabeth Whalen Model-View-Controller (MVC) Classes
OLIN Matthias Futschik Optimized local intensity-dependent normalisation of two-color microarrays
OLINgui Matthias Futschik Graphical user interface for OLIN
prada Florian Hahne Data analysis for cell-based functional assays
quantsmooth Jan Oosting Quantile smoothing and genomic visualization of array data
reb Karl J. Dykema Regional Expression Biases
simpleaffy Crispin Miller Very simple high level analysis of Affymetrix data
SNPchip Robert Scharpf Classes and Methods for high throughput SNP chip data
tilingArray W. Huber Analysis of high-density oligonucleotide tiling arrays
topGO Adrian Alexa topGO: Enrichment analysis for Gene Ontology
VanillaICE Robert Scharpf Methods for fitting Hidden Markov Models to SNP chip data