Bioconductor Task View: GraphsAndNetworks

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Package Maintainer Title
apComplex Denise Scholtens Estimate protein complex membership using AP-MS protein data
biocGraph Li Long Graph examples and use cases in Bioinformatics
BioMVCClass Elizabeth Whalen Model-View-Controller (MVC) Classes That Use Biobase
CORREP Dongxiao Zhu Multivariate Correlation Estimator and Statistical Inference Procedures.
gaggle Paul Shannon Broadcast data between R and Java bioinformatics programs
GeneTS Korbinian Strimmer Microarray Time Series and Network Analysis
graph Robert Gentleman graph: A package to handle graph data structures
GraphAT Thomas LaFramboise Graph Theoretic Association Tests
hypergraph Robert Gentleman A package providing hypergraph data structures
iSNetwork Elizabeth Whalen Interactive Network Plots
maigesPack Gustavo H. Esteves Functions to handle cDNA microarray data, including several methods of data analysis
MVCClass Elizabeth Whalen Model-View-Controller (MVC) Classes
nem Florian Markowetz Nested Effects Models to reconstruct phenotypic hierarchies
ontoTools Vince Carey graphs and sparse matrices for working with ontologies; formal objects for nomenclatures with provenance management
pathRender Li Long Render molecular pathways
pkgDepTools Seth Falcon Package Dependency Tools
ppiStats Tony Chiang Protein-Protein Interaction Statistical Package
RBGL Li Long Interface to boost C++ graph lib
Rgraphviz Li Long Provides plotting capabilities for R graph objects
rHVDM Martino Barenco Hidden Variable Dynamic Modeling
rsbml Michael Lawrence R support for SBML, using libsbml
SBMLR Tomas Radivoyevitch SBML-R Interface and Analysis Tools
ScISI Tony Chiang In Silico Interactome
simulatorAPMS Tony Chiang Computationally simulates the AP-MS technology.