glymotif: Extract Glycan Motifs from Glycan Structures
Identify, count, and match recurring substructures in glycan structures. Supports concrete and generic monosaccharide matching, several structural alignment modes, node-to-node mappings, and batch analysis using subgraph isomorphism. Includes curated motif annotations derived from the 'GlycoMotif' resource <https://glycomotif.glyomics.org/>. Integrates with 'glyrepr' and 'glyparse' for structural glycomics workflows.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.1) |
| Imports: | cli, glyrepr (≥ 1.0.0), glyparse (≥ 0.6.0), glydraw (≥ 0.4.0), igraph, purrr, rlang, stringr, checkmate, tibble, vctrs, lifecycle, Rcpp |
| LinkingTo: | BH, Rcpp |
| Suggests: | testthat (≥ 3.0.0), patrick, knitr, rmarkdown, dplyr |
| Published: | 2026-10-07 |
| DOI: | 10.32614/CRAN.package.glymotif (may not be active yet) |
| Author: | Bin Fu  [aut, cre,
cph] |
| Maintainer: | Bin Fu <23110220018 at m.fudan.edu.cn> |
| BugReports: | https://github.com/glycoverse/glymotif/issues |
| License: | MIT + file LICENSE |
| Copyright: | see file COPYRIGHTS |
| URL: | https://glycoverse.github.io/glymotif/, https://github.com/glycoverse/glymotif |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| CRAN checks: | glymotif results |
Documentation:
| Reference manual: | glymotif.html , glymotif.pdf |
| Vignettes: |
Getting Started with glymotif (source, R code) The Science Behind Motif Matching (source, R code) |
Downloads:
| Package source: | glymotif_1.0.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: glymotif_1.0.0.zip |
| macOS binaries: | r-release (arm64): glymotif_1.0.0.tgz, r-oldrel (arm64): glymotif_1.0.0.tgz, r-release (x86_64): glymotif_1.0.0.tgz, r-oldrel (x86_64): glymotif_1.0.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=glymotif to link to this page.