archipelago: Visualising Variant Set Association Test Results
Provides a graphical method for joint visualisation of Variant Set Association Test (VSAT) results and individual variant association statistics. The Archipelago method assigns genomic coordinates to variant set statistics, allowing simultaneous display of variant-level and set-level signals in a unified plot. This supports interpretation of both collective and individual variant contributions in genetic association studies using variant aggregation approaches. For more see Lawless et al. (2026) <doi:10.1002/gepi.70025>.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | ggplot2, dplyr |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2026-02-10 |
| DOI: | 10.32614/CRAN.package.archipelago (may not be active yet) |
| Author: | Dylan Lawless 
[aut, cre, cph] |
| Maintainer: | Dylan Lawless <admin at switzerlandomics.ch> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Language: | en-GB |
| Materials: | README, NEWS |
| CRAN checks: | archipelago results |
Documentation:
| Reference manual: | archipelago.html , archipelago.pdf |
| Vignettes: |
Archipelago: Visualising Variant Set Association Results (source, R code) |
Downloads:
| Package source: | archipelago_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): archipelago_0.1.0.tgz, r-oldrel (arm64): archipelago_0.1.0.tgz, r-release (x86_64): archipelago_0.1.0.tgz, r-oldrel (x86_64): archipelago_0.1.0.tgz |
Linking:
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