Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput
Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API
<https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are
compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>.
| Version: |
0.1.2-0.1.4 |
| Depends: |
R (≥ 4.4.0) |
| Imports: |
DBI, duckdb, utils |
| Suggests: |
tinytest |
| Published: |
2026-02-23 |
| DOI: |
10.32614/CRAN.package.Rduckhts (may not be active yet) |
| Author: |
Sounkou Mahamane Toure [aut, cre],
James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] (Htslib
Authors),
DuckDB C Extension API Authors [ctb] |
| Maintainer: |
Sounkou Mahamane Toure <sounkoutoure at gmail.com> |
| BugReports: |
https://github.com/RGenomicsETL/duckhts/issues |
| License: |
GPL-3 |
| Copyright: |
See inst/COPYRIGHT |
| URL: |
https://github.com/RGenomicsETL/duckhts |
| NeedsCompilation: |
no |
| SystemRequirements: |
GNU make, cmake, zlib, libbz2, liblzma, libcurl,
openssl (development headers) |
| Materials: |
NEWS |
| CRAN checks: |
Rduckhts results [issues need fixing before 2026-03-09] |