Last updated on 2026-03-04 07:51:29 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.25 | 4.95 | 56.69 | 61.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.25 | 3.16 | 38.69 | 41.85 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.25 | 8.00 | 80.23 | 88.23 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.25 | 8.00 | 95.69 | 103.69 | OK | |
| r-devel-macos-arm64 | 1.0.25 | 1.00 | 42.00 | 43.00 | OK | |
| r-devel-windows-x86_64 | 1.0.25 | 8.00 | 94.00 | 102.00 | OK | |
| r-patched-linux-x86_64 | 1.0.24 | 4.07 | 42.01 | 46.08 | ERROR | |
| r-release-linux-x86_64 | 1.0.24 | 4.67 | 42.07 | 46.74 | ERROR | |
| r-release-macos-arm64 | 1.0.25 | 1.00 | 38.00 | 39.00 | OK | |
| r-release-macos-x86_64 | 1.0.25 | 3.00 | 78.00 | 81.00 | OK | |
| r-release-windows-x86_64 | 1.0.25 | 7.00 | 79.00 | 86.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.25 | 1.00 | 47.00 | 48.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.25 | 3.00 | 123.00 | 126.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.25 | 9.00 | 97.00 | 106.00 | OK |
Version: 1.0.24
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
Saving _problems/test_modify_pubmed_db_dup-53.R
Saving _problems/test_modify_pubmed_db_dup-69.R
Saving _problems/test_modify_pubmed_db_std-24.R
Saving _problems/test_modify_pubmed_db_std-44.R
[ FAIL 4 | WARN 0 | SKIP 4 | PASS 67 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_dup.R:51:3'): modifyPubmedDb create is unique ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:3
2. └─pmparser::getCitation(...)
── Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:3
2. └─pmparser::getCitation(...)
── Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:3
2. └─pmparser::getCitation(...)
── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
2. └─pmparser::getCitation(...)
[ FAIL 4 | WARN 0 | SKIP 4 | PASS 67 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.24
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
Saving _problems/test_modify_pubmed_db_dup-53.R
Saving _problems/test_modify_pubmed_db_dup-69.R
Saving _problems/test_modify_pubmed_db_std-24.R
Saving _problems/test_modify_pubmed_db_std-44.R
[ FAIL 4 | WARN 0 | SKIP 4 | PASS 67 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_dup.R:51:3'): modifyPubmedDb create is unique ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:3
2. └─pmparser::getCitation(...)
── Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:3
2. └─pmparser::getCitation(...)
── Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:3
2. └─pmparser::getCitation(...)
── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
Error in `if (md5Database == md5Remote) { message("Citation table in database is already up-to-date.") return(invisible()) }`: argument is of length zero
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
2. └─pmparser::getCitation(...)
[ FAIL 4 | WARN 0 | SKIP 4 | PASS 67 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-release-linux-x86_64