CRAN Package Check Results for Package phyr

Last updated on 2025-10-10 21:49:43 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 114.99 155.04 270.03 WARN
r-devel-linux-x86_64-debian-gcc 1.1.0 87.87 108.91 196.78 WARN
r-devel-linux-x86_64-fedora-clang 1.1.0 743.25 WARN
r-devel-linux-x86_64-fedora-gcc 1.1.0 834.71 WARN
r-devel-windows-x86_64 1.1.0 137.00 179.00 316.00 WARN
r-patched-linux-x86_64 1.1.0 128.61 147.67 276.28 WARN
r-release-linux-x86_64 1.1.0 121.27 145.54 266.81 WARN
r-release-macos-arm64 1.1.0 116.00 OK
r-release-macos-x86_64 1.1.0 185.00 OK
r-release-windows-x86_64 1.1.0 140.00 178.00 318.00 WARN
r-oldrel-macos-arm64 1.1.0 109.00 NOTE
r-oldrel-macos-x86_64 1.1.0 130.00 NOTE
r-oldrel-windows-x86_64 1.1.0 163.00 226.00 389.00 WARN

Additional issues

gcc

Check Details

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/phyr.Rcheck/00install.out’ for details. * used C++ compiler: ‘Debian clang version 19.1.7 (7)’ Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See ‘/data/gannet/ripley/R/packages/tests-clang/phyr.Rcheck/00install.out’ for details. * used C++ compiler: ‘clang version 21.1.2’ Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See ‘/data/gannet/ripley/R/packages/tests-devel/phyr.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See 'd:/Rcompile/CRANpkg/local/4.6/phyr.Rcheck/00install.out' for details. * used C++ compiler: 'g++.exe (GCC) 14.2.0' Flavor: r-devel-windows-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’ Flavor: r-patched-linux-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’ Flavor: r-release-linux-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See 'd:/Rcompile/CRANpkg/local/4.5/phyr.Rcheck/00install.out' for details. * used C++ compiler: 'g++.exe (GCC) 14.2.0' Flavor: r-release-windows-x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 12.1Mb sub-directories of 1Mb or more: doc 2.0Mb libs 9.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: cor_phylo.cpp:76:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:81:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] cor_phylo.cpp:89:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See 'd:/Rcompile/CRANpkg/local/4.4/phyr.Rcheck/00install.out' for details. * used C++ compiler: 'g++.exe (GCC) 13.3.0' Flavor: r-oldrel-windows-x86_64