Last updated on 2026-01-26 19:49:08 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.12 | 811.93 | 849.05 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | OK | ||||
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 69.00 | 1351.47 | 1420.47 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 59.00 | 1153.46 | 1212.46 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 40.00 | 578.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.49 | 732.84 | 786.33 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.01 | 730.59 | 763.60 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 537.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | ERROR | ||||
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 696.00 | 721.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 53.00 | 676.00 | 729.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [114s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-27 05:42:32.399123: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.399415: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.402617: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.408867: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.421819: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.421968: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.424295: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.430572: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.437642: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.437833: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.442427: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.465189: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.466677: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.473393: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.473556: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.478542: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.49344: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.49398: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.515979: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.516122: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.520725: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.554292: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.562378: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.562561: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.574813: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.651927: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.653225: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.687193: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.687341: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.689931: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.695992: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.703691: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.703873: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.708622: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.724127: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.724623: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.762445: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.762591: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.764945: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.770916: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.783496: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.783709: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.788465: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.803492: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.803929: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.823596: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.82373: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.826371: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.832625: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.847125: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.847355: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.893396: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.908304: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.908811: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.930563: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.930711: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.933263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.939448: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:32.952387: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.952587: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.957219: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:32.972482: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:32.972964: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:32.993336: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:32.993486: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:32.995871: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:33.002095: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:33.015613: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-27 05:42:33.015813: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:33.020583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:33.035332: embedding
> test_pipeop_isomap.R: 2026-01-27 05:42:33.03577: DONE
> test_pipeop_isomap.R: 2026-01-27 05:42:33.070736: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:33.070917: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:33.073224: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:33.079359: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:33.1006: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:33.100751: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:33.103092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:33.109153: Classical Scaling
> test_pipeop_isomap.R: 2026-01-27 05:42:33.114907: Isomap START
> test_pipeop_isomap.R: 2026-01-27 05:42:33.115029: constructing knn graph
> test_pipeop_isomap.R: 2026-01-27 05:42:33.117258: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-27 05:42:33.123259: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [320s/400s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-26 10:19:33.190936: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:33.191499: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:33.221189: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:33.253175: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:33.384082: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:33.384408: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:33.391932: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:33.434789: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:33.484436: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:33.484886: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:33.516937: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:33.631639: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:33.6328: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:33.688763: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:33.689071: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:33.73153: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:33.832134: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:33.833316: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:34.001695: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:34.001995: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:34.050921: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:34.323591: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:34.387115: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:34.387586: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:34.460967: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:35.004517: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:35.008941: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:35.367292: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:35.367593: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:35.374571: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:35.432371: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:35.489686: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:35.490104: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:35.548187: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:35.652959: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:35.654084: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:35.936067: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:35.936372: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:35.9642: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:36.017961: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:36.100007: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:36.100443: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:36.153212: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:36.257368: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:36.258526: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:36.443535: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:36.44383: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:36.450838: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:36.504785: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:36.620094: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:36.620513: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:36.664273: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:36.763891: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:36.765021: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:36.930157: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:36.930457: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:36.952685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:36.981172: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:37.1544: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:37.154875: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:37.196048: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:37.321391: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:37.323761: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:37.48301: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:37.483292: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:37.505054: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:37.554367: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:37.643144: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 10:19:37.643636: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:37.696264: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:37.811356: embedding
> test_pipeop_isomap.R: 2026-01-26 10:19:37.814906: DONE
> test_pipeop_isomap.R: 2026-01-26 10:19:37.984954: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:37.985257: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:38.005854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:38.060385: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:38.211199: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:38.232222: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:38.244259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:38.295583: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 10:19:38.343253: Isomap START
> test_pipeop_isomap.R: 2026-01-26 10:19:38.343563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 10:19:38.362959: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 10:19:38.397758: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-23 21:16:27.219948: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.220987: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.236572: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.260744: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.378932: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.379508: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.387638: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.402754: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.446137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.447119: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.468526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.51888: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.520702: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.550695: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.551402: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.566254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.61067: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.612635: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.744686: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.745308: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.765965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.876698: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.9247: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.925702: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.98113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.212569: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.217711: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.454488: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.455112: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.466487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.489004: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:28.542654: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.543563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.567087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.616799: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.618684: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.879887: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.880703: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.893513: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.916254: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.00898: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.010139: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.033639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.084773: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.0866: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225234: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225898: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.238092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.260775: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.333826: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.334764: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.35337: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.39555: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.397577: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507543: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507999: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.533037: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.552449: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627045: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627846: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.64328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.689077: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.690683: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810192: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.823068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.845674: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.92462: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.925551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.949145: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.000386: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:30.00223: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140067: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.167155: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.189673: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290376: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290869: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.299982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.315442: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.34708: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.347551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.357353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.378585: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64