Last updated on 2026-10-08 08:03:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.5 | 66.11 | 211.66 | 277.77 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.5 | 54.70 | 149.36 | 204.06 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.5 | 45.00 | 142.04 | 187.04 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.5 | 58.00 | 141.00 | 199.00 | OK | |
| r-devel-windows-x86_64 | 2.0.5 | 102.00 | 305.00 | 407.00 | OK | |
| r-patched-linux-x86_64 | 2.0.5 | 69.14 | 192.99 | 262.13 | OK | |
| r-release-linux-x86_64 | 2.0.5 | OK | ||||
| r-release-macos-arm64 | 2.0.5 | 15.00 | 65.00 | 80.00 | OK | |
| r-release-macos-x86_64 | 2.0.5 | 45.00 | 236.00 | 281.00 | OK | |
| r-release-windows-x86_64 | 2.0.5 | 102.00 | 227.00 | 329.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.5 | OK | ||||
| r-oldrel-macos-x86_64 | 2.0.5 | 44.00 | 219.00 | 263.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.5 | 114.00 | 300.00 | 414.00 | OK |
Version: 2.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.5
• Read the guide: run vignette("quickstart", package="harmony")
• Get help: Visit the website at <https://korsunskylab.github.io/harmony2/> and
report issues on <https://github.com/immunogenomics/harmony/issues>
>
> test_check("harmony")
120exists, retrying for cluster 10 3.55345
35exists, retrying for cluster 46 3.41269
Saving _problems/test_integration-40.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 12 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_integration.R:37:5'): increasing theta decreases chi2 between Cluster and Batch assign ──
Expected `sum(((obj0$O - obj0$E)^2)/obj0$E)` > `sum(((obj1$O - obj1$E)^2)/obj1$E)`.
Actual comparison: 379.5 <= 383.8
Difference: -4.4 <= 0
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang