Last updated on 2025-10-10 14:49:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3 | 54.39 | 623.24 | 677.63 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.3 | 35.71 | 443.49 | 479.20 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.3 | 1058.52 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3 | 1084.31 | ERROR | |||
| r-devel-windows-x86_64 | 2.3 | 55.00 | 617.00 | 672.00 | ERROR | |
| r-patched-linux-x86_64 | 2.3 | 56.66 | 592.90 | 649.56 | OK | |
| r-release-linux-x86_64 | 2.3 | 47.36 | 591.96 | 639.32 | OK | |
| r-release-macos-arm64 | 2.3 | 271.00 | OK | |||
| r-release-macos-x86_64 | 2.3 | 516.00 | OK | |||
| r-release-windows-x86_64 | 2.3 | 51.00 | 615.00 | 666.00 | OK | |
| r-oldrel-macos-arm64 | 2.3 | 196.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.3 | 315.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.3 | 72.00 | 776.00 | 848.00 | OK |
Version: 2.3
Check: examples
Result: ERROR
Running examples in ‘dowser-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in .call_fun_in_pwalign("pairwiseAlignment", ...) :
pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
formally defunct in Biostrings >= 2.77.1. Please call
pwalign::pairwiseAlignment() to get rid of this error.
Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.3
Check: examples
Result: ERROR
Running examples in ‘dowser-Ex.R’ failed
The error most likely occurred in:
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in .call_fun_in_pwalign("pairwiseAlignment", ...) :
pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
formally defunct in Biostrings >= 2.77.1. Please call
pwalign::pairwiseAlignment() to get rid of this error.
Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pwalign’
Flavor: r-oldrel-macos-x86_64