cmst.R
*SimCrossCausal
*GetCommonQtls
	CreateCovMatrix
	FindCommonQtls
	DropMissing
*CMSTtests
	ParametricIUCMST
	NonparametricIUCMST
	ParametricJointCMST
	DropMissing
	GetLogLik
		CreateDesignMatrix
			HkDesignMatrix

*CMSTtestsList
	CMSTtests

FitAllTests
	CMSTtests
	CitTests
CitTests

plot.R
plot.cit
plot.bic.aic
plot.par.cmst.joint
plot.par.cmst
plot.non.par.cmst

counts
performance.summaries.cmst
performance.summaries.cit
get.power.type1.prec.matrix
	performance.summaries.cmst
	performance.summaries.cit
get.power.type1.prec.matrix.2
	performance.summaries.cmst
	performance.summaries.cit
JoinKoOutputs
GetCis
GetCisCandReg
PerformanceSummariesKo
PrecTpFpMatrix
	PerformanceSummariesKo
CreateTraitsLodInt
GetCandReg
GetCoMappingTraits

util.R
DropMissing
normal.trans

sim.R
mySimulations
	CitTests
SimCross1
SimCross2
SimCross3
SimCross4
SimCross5
SimCross6

roc.R
get.ROC.Matrix
	causal.ROC.curve
GetRocMatrix
	CausalRocCurve
